FANTOM5

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Link to publicly available data: http://fantom.gsc.riken.jp/5/datafiles/latest/extra/

Transcription factors: http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Transcription_factors/

Link to track hub: http://genome.ucsc.edu/cgi-bin/hgHubConnect

Link to papers: http://fantom.gsc.riken.jp/papers/

Robust TSSs

cat robust.bed  | wc -l
184827

cat robust.variant_function | cut -f1 | sort | uniq -c | sort -k1rn
74757580 intronic
39166162 upstream
33567475 intergenic
10486771 exonic
9709919 UTR5
9217851 ncRNA_intronic
5768601 UTR3
2793550 ncRNA_exonic
1329686 downstream
1273059 upstream;downstream
 200797 splicing
  14541 UTR5;UTR3
  13420 ncRNA_splicing
   4991 exonic;splicing
   3333 ncRNA_exonic;splicing