Add Docker to your toolkit

Docker has been around for 8 years and it has become a very popular platform for developing software. In the 2020 Stack Overflow Developer Survey, 39.2% of professional developers (total of 44,705) reported that they have done development work using Docker. Docker is only behind Linux and Windows! For the full list check out Stack…

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Execute gatk-workflows locally

The Broad Institute have shared their GATK workflows on GitHub, however they are configured to be used with Google Cloud. I was not able to find a lot of information on executing the workflows locally and I only found this tutorial. I ran into problems while trying to follow the tutorial but eventually got it…

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Reproducible Bioinformatics

I will be giving a workshop titled “Reproducible Bioinformatics” at BioC Asia tomorrow. I have been thinking a lot about this topic and my aim for the workshop is to introduce computational tools and demonstrate how they can be used to help promote reproducibility when performing bioinformatic analyses. Ensuring reproducibility shouldn’t be an extra burden…

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