Finding genes with co-expression patterns

Can the R bioconductor package "WGCNA" find artefactually created modules? Firstly some (subpar) code to generate an artefactual list of genes with co-expression patterns (modules): Running the code: ./generate_random_module.pl 10 1000 20 > 10_sample_1000_list_20_module.tsv Patterns: 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 1 1...

Continue Reading

Hierarchical clustering with p-values

The code, which allowed me to use the Spearman's rank correlation coefficient, was kindly provided to me by the developer of pvclust. Firstly download the unofficial package or just source it from my DropBox account. Start up R and follow: Hierarchical clustering with p-values.

Continue Reading