Storing FASTQ as unaligned CRAM

I was updating my BAM to CRAM post spurred on by a recent comment and then I wondered whether I could store my FASTQ files as unaligned CRAM files to save space. I thought it wouldn’t be possible because the reads are unaligned and therefore we can’t make use of a reference to save space…

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Updating my Docker documentation

In my last post I outlined an approach for automatically creating reproducible documentation using GitHub Actions. I have now updated my Docker documentation using the same approach but without using a container because then I’d have to run Docker inside a Docker container (which is actually possible using GitLab’s CI/CD platform but I haven’t tried…

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