Getting started with Cell Ranger

Cell Ranger is a set of analysis pipelines that process Chromium single cell 3′ RNA-seq data. The pipelines process raw sequencing output, performs read alignment, generate gene-cell matrices, and can perform downstream analyses such as clustering and gene expression analysis. Cell Ranger includes four pipelines: cellranger mkfastq cellranger count cellranger aggr cellranger reanalyze You can…

Continue Reading