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Bioinformatics

Welcome! There are a LOT of bioinformatics programs, databases and techniques. Before I forget how I did something, I keep a record of what I did here. This page is constantly being updated, so please check back. If you have any questions or requests email (me at davetang.org).

Table of contents

  • General
    • Basic Statistics
    • Making figures
    • What is bioinformatics
    • XML
  • Codes
    • IUPAC SNP codes
    • Nucleic Acids Code
  • Bioinformatics programs/tools
    • BEDTools
    • Blat
    • BLAST
    • Bwa
    • Clover
    • ELAND
    • FASTX-Toolkit
    • GGobi
    • IGV
    • Maq
    • MrBayes
    • SSAHA
    • SAMTools
    • SAMStat
    • UCSC genome browser
    • Velvet
    • RepeatMasker
  • File specifications
    • SAM
  • Bioinformatics databases
    • Entrez Gene
    • GO
    • KEGG
    • UniProt
  • Bioinformatics analysis
    • Visualising data using sound
    • R_project
    • Analysing Affymetrix Data
    • Phylogenetic Profiles
    • Principal component analysis


General

Basic Statistics

Making figures

What is bioinformatics

XML


Codes

IUPAC SNP codes

Nucleic Acids Code


Bioinformatics programs/tools

BEDTools

Blat

BLAST

Bwa

Clover

ELAND

FASTX-Toolkit

GGobi

IGV

Maq

MrBayes

SSAHA

SAMTools

SAMStat

UCSC genome browser

Velvet


RepeatMasker


File specifications

SAM


Bioinformatics databases

Entrez Gene

GO

KEGG

UniProt


Bioinformatics analysis

Visualising data using sound

R_project

Analysing Affymetrix Data

Phylogenetic Profiles

Principal component analysis



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